Not really that Gromacs-related, but: In Ambertools, there's a program called nab(?) a.k.a. nucleic acid builder which performs that task very well. Sequence in, pdb-structure out, also for DNA single strands and RNA.
Regards, Alex > Dear All, > > I want to simulate interaction between single strand dna and cnt. I tried > to use > Biomer (from case group webpage), but it's not working. When I try to open > B.html in my browser, I get a blank page. Could anyone please tell me if > there > is another way to generate .pbd file for dna? > > Thanks, > Majid > > > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
