Hello I am running a protein-RNA simulation, and was unable to find OLPS-AA topologies for RNA nucleotides. I am aware AMBER or CHARMM are the best force fields for nucleotides, but my protein only simulations were done in OPLS. Can I get any help with OPLS-AA topologies for, say, GMP compatible with gromacs v. 4.5.3. If this is not available, I will try to make these, but where can I find a topology in the first place?
Maria Maria G. Technical University of Denmark Copenhagen
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