Dear All
I have a trajectory(.xtc) and its corresponding .tpr file: I used the following commands separately but the results were different,Why?? g_rms -f trajectory.xtc -s structure.tpr -n index.ndx -o rms.xvg I choosed group number 12 (drug in pulling problem) for two choose g_rmsdist -f trajectory.xtc -s structure.tpr -o rmsdist.xvg I choosed the group number 12 Since I didn't determine the reference for g_rms ,I expect the same results,because both of them choose the tpr structure as the reference one. Am I right? Thanks in advance
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