Thanks Justin, That is pretty much the only tutorial one can found. I have one question now, how do I force a particular orientation of my protein during genbox (for example if i need to pull along N->C vector, i need my protein oriented that way, i.e in Z direction for example to later apply the force in that direction).
> Date: Tue, 22 Mar 2011 11:15:54 -0400 > From: [email protected] > To: [email protected] > Subject: Re: [gmx-users] AFM pulling simulations > > > > X Rules wrote: > > Hello All, > > > > I am looking for a very simple (step-by-step) tutorial on AFM pulling > > simulations (constant force/ constant velocity) with gromacs. > > > > Can someone point me to a simple tutorial to perform these simulations > > with gromacs? > > > > Thanks, > > > > http://www.gromacs.org/Documentation/Tutorials#Pull_Code_and_Umbrella_Sampling > > -Justin > > -- > ======================================== > > Justin A. Lemkul > Ph.D. Candidate > ICTAS Doctoral Scholar > MILES-IGERT Trainee > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > ======================================== > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
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