I would like to calculate the bindings that occur at the same time during my md trajectory.
i.e. The binding between an atom of a residue of the protein and water molecule and the binding between the same water molecule with another atom of a residue of the DNA. I need to also identify which atoms are involved in the formation of these salt bridge during my trajectory. I tried to use g_saltbr command, but I think that doesn't do to my case and I didn't understand very well the output generated. Thanks, Caterina
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