majid hasan wrote:
Okay, so here is an output attached, for cubic box of length 10 (I removed some atoms to reduce the size below 50kB).


Please do not attach coordinate files unless requested. Most people who are uninterested in this thread do not want to waste time downloading large emails that they don't need. It is substantially more efficient to post a link to an image in a freely accessible place, i.e. point #4:

http://www.gromacs.org/Support/Mailing_Lists#Mailing_List_Etiquette

Also, ad hoc removal of atoms is not helpful to solving your issue.

-Justin

--
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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