dear users after running the command "pdb2gmx -f 1OL5.pdb -o 1OL5.gro -water spc" ,i was faced with the erorr: "Fatal error: Atom CG not found in residue seq.nr. 251 while adding atom". i used Gromacs 4.5.3 with AMBER99SB force field. it seems that some atomes are missing.should i be modeling the protein to have all it's atoms? is Gromacs have any features to correct the missing ones? thanks!
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