dear users in order to simulate a Kinase protein attached with two ligands (MG and ATP in particular), i am trying to use amber03 force field with xleap in amber10 (based on some relevant litratures). in fact i am going through a tutorial introduced by Justin Lemkul, entitled "protein ligand complex", to learn how to do the simulation. but i dont know how to deal with xleap. is it some thing like "PRODGR", mentioned in the tutorial to deal with the ligand? all the best! sajad
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