I had the issue of shared libraries while installing which I did troubleshoot and the installation went without any errors. I tried converting the pdb file to a new one using editconf and it runs perfectly fine. So, there is some issue with pdb2gmx, which I am not able to detect. Any hints will be appreciated. Thanks and Regards, Raghu
Subject: Re: [gmx-users] pdb2gmx segmentation fault To: Discussion list for GROMACS users <[email protected]> Message-ID: <[email protected]> Content-Type: text/plain; charset=ISO-8859-1; format=flowed On 4/20/2011 7:38 AM, Ragothaman Yennamalli wrote: > Hi, > I have installed the latest version of gromacs 4.5.4 and the > installation went fine. When I run pdb2gmx I get Segmentation fault > even before I could select the force field options. I tried with > different pdb files and I get seg fault without any other error messages. > The command is: pdb2gmx -f new.pdb -o conf.gro -p topol.top Probably, no other GROMACS command works either, because of some shared library issue related to your new installation. Mark -- **************************************** Ragothaman M Yennamalli, Ph.D. Postdoctoral Research Associate 1012 Crop Genome Informatics Laboratory Department of Genetics, Development and Cell Biology Iowa State University Ames, Iowa 50011-3260 USA +1 515-294-8971 (Office) +1 515-294-8280 (Fax) +1 515-851-1016 (Mobile) "When you can do the common things of life in an uncommon way, you will command the attention of the world." -George Washington Carver http://www.public.iastate.edu/~raghu/ http://www.artistrkrishnarao.com/ ***************************************
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