The MPI library is able to run other MPI jobs as well as other parallel Gromacs runs, and it just seems like this run causes this difficulty. I am using Platform MPI 8.1.
Regards, Wadud. >-----Original Message----- >From: [email protected] [mailto:[email protected]] On >Behalf Of Mark Abraham >Sent: Wednesday, April 20, 2011 12:46 PM >To: Discussion list for GROMACS users >Subject: Re: [gmx-users] dhfr-impl-1nm.bench run keeps failing > >On 4/20/2011 6:57 PM, Miah Wadud Dr (ITCS) wrote: >> Hello, >> >> I am trying to run the dhfr-impl-1nm.bench benchmark but this keeps failing. >I am using Gromacs 4.5.3 built using both Intel and PGI compilers, but both >builds fail with the error message: >> >> MPI Application rank 1 exited before MPI_Finalize() with status 0 >> >> The rank and the status value vary. Any idea what could be wrong? > >No idea. That's just a generic advisory from the MPI library. Only the >mdrun stdout or .log file could have a GROMACS-specific diagnostic >message. You need to be sure that you can run other MPI programs, too. > >Mark > > > >-- >gmx-users mailing list [email protected] >http://lists.gromacs.org/mailman/listinfo/gmx-users >Please search the archive at >http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >Please don't post (un)subscribe requests to the list. Use the >www interface or send it to [email protected]. >Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
