vivek sharma wrote:
Hi there,
I am trying to install gromacs-4.5.4 on my local machine with FC, I
tried following set of commands:
-----------------------------to install FFTW at location
root/Desktop/Vivek/calcitonin/FFTW
./configure --prefix=/root/Desktop/Vivek/calcitonin/FFTW
--enable-long-double
make
make install
--------------------
export LDFLAGS=-L/root/Desktop/Vivek/calcitonin/FFTW/lib
export CPPFLAGS=-I/root/Desktop/Vivek/calcitonin/FFTW/include
-------------------to install gromacs at location
/root/Desktop/Vivek/calcitonin/GROMACS-4.5.4
./configure --prefix=/root/Desktop/Vivek/calcitonin/GROMACS-4.5.4/
make
make install
--------------------------------
and end up with following error
------------------------
/usr/bin/ld: /usr/local/lib/libfftw3f.a(plan-dft-c2r-3d.o): relocation
R_X86_64_32 against `a local symbol' can not be used when making a
shared object; recompile with -fPIC
/usr/local/lib/libfftw3f.a: could not read symbols: Bad value
collect2: ld returned 1 exit status
make[2]: *** [libmd.la <http://libmd.la>] Error 1
make[2]: Leaving directory
`/root/Desktop/Vivek/calcitonin/gromacs-4.5.4/src/mdlib'
make[1]: *** [install-recursive] Error 1
make[1]: Leaving directory
`/root/Desktop/Vivek/calcitonin/gromacs-4.5.4/src'
make: *** [install-recursive] Error 1
-----------------------------------------
Does anybody have any idea regarding this error. Any insight and
suggestion are appreciated.
Please always check the mailing list archive and Gromacs site before posting.
This issue has come up dozens of times now, and the possible solutions are
discussed in the installation instructions.
http://www.gromacs.org/Downloads/Installation_Instructions#Prerequisites
-Justin
regards,
Vivek
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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