Dear All, Hi! I 'm using Charmm-gui to generate an empty membrane pdb and toppar, i managed to get the charmm topology from toppar directory. With that, I'm trying to put additional lipid topology from charmm-gui into /charmm27.ff/lipids.rtp (gromacs4.5.4) for my empty membrane. But with pdb2gmx, it failed to recognize the residue type with the error "Residue not found in residue topology database". May i know in the rtp file format, is the spacing crucial in order for gromacs to process?
thank you in advance. best regards, bing
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