> ------------------------------ > > Message: 4 > Date: Thu, 26 May 2011 13:15:40 -0400 > From: "Justin A. Lemkul" <[email protected]> > Subject: Re: [gmx-users] Re: Error of installing gromacs v4.5.4 > To: Discussion list for GROMACS users <[email protected]> > Message-ID: <[email protected]> > Content-Type: text/plain; charset=UTF-8; format=flowed > > Hsin-Lin Chiang wrote: > > Hi, > > > > Thank you for your reply. > > I'm not so good in computer. > > I think the platform you ask me is "Linux", and kernel is 2.4.21-60.ELsmp > > The compiler is gcc v3.2.3 in the machine in my institute. > > > > The hardware specs are more significant here.  "cat /proc/cpuinfo" > should > provide the necessary information.  The exact configuration command you > used > would also be useful. > Hi,
So I think the information you need is ------ processor       : 0 vendor_id       : GenuineIntel cpu family      : 6 model           : 15 model name      : Intel(R) Xeon(R) CPU            5160  @ 3.00GHz stepping        : 6 cpu MHz         : 2992.635 cache size      : 4096 KB physical id     : 0 siblings        : 2 core id         : 0 cpu cores       : 2 runqueue        : 0 fdiv_bug        : no hlt_bug         : no f00f_bug        : no coma_bug        : no fpu             : yes fpu_exception   : yes cpuid level     : 10 wp              : yes flags           : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm nx lm bogomips        : 5976.88 ----- Thank you for your opinion. I'll ask out technique stuff update our gcc and try to install again. Sincerely yours, Hsin-Lin The same content in processor 1 2 3 > Note that gcc 3.2.3 is extremely old, and often times new code will not > compile > properly with old compilers.  You should upgrade gcc to something more > modern. > Surely your system has a package manager that can upgrade such components. > > -Justin > > > Sincerely yours, > > Hsin-Lin > >  > Message: 1 > >  > Date: Thu, 26 May 2011 18:03:09 +0200 > >  > From: Szil?rd P?ll <[email protected]> > >  > Subject: Re: [gmx-users] Error of installing gromacs v4.5.4 > >  > To: Discussion list for GROMACS users <[email protected]> > >  > Message-ID: <[email protected]> > >  > Content-Type: text/plain; charset=ISO-8859-1 > >  > > >  > Hi Hsin-Lin, > >  > > >  > Your problem are caused by a missing header file which is included > > by > >  > the nobonded SSE kernels which is indicated by the first error in > > your > >  > output: > >  > > >  > nb_kernel400_ia32_sse.c:22:23: emmintrin.h: No such file or > > directory > >  > > >  > This header is needed for SSE and SSE2, but for some reason you > > don't > >  > have it. What platform are you compiling on/for and what compiler > > are > >  > you using? > >  > > >  > Alternatively, you can turn off acceleration and you'll be able to > >  > compile the code, but it will run *much* slower than with the > >  > accelerated kernels. > >  > > >  > -- > >  > Szil憳削 > > > > -- > ======================================== > > Justin A. Lemkul > Ph.D. Candidate > ICTAS Doctoral Scholar > MILES-IGERT Trainee > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin > > ======================================== > > ------------------------------ > > -- > gmx-users mailing list > [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > End of gmx-users Digest, Vol 85, Issue 171 > ******************************************
-- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
