I know this, but this file cannot be used because the atom name is quite different from gromacs CHARMM36 topol library.
At 2011-05-30，"Rausch, Felix" <[email protected]> wrote: Check this link given by another (unknown) mailing list user yesterday (Topic name:about POPC in Gromacs )! http://terpconnect.umd.edu/~jbklauda/research/download.html Von:[email protected] im Auftrag von albert Gesendet: So 29.05.2011 21:23 An: Discussion list for GROMACS users Betreff: Re:Re: [gmx-users] where can I download POPC membrane file? But I don't think it is pre-equilibrium POPC membrane...... and more over, the position from VMD is not pre-aligned with OPM database. It would be a great problem for putting our protein in the membrane...... At 2011-05-30，"Sergio Manzetti" <[email protected]> wrote: You can build it using VMD (VIsual Molecular Dynamics) 2011/5/30 albert<[email protected]> Dear all: I would like to use charmm36 and POPC for membrane protein simulation. and I am wondering where can I download charmm36 pre-pribriumed POPC PDB and topol file for gromacs? Thank you very much Best -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive athttp://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it [email protected]. Can't post? Readhttp://www.gromacs.org/Support/Mailing_Lists
-- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
