> Message: 1 > Date: Tue, 31 May 2011 06:56:16 -0400 > From: "Justin A. Lemkul" <[email protected]> > Subject: Re: [gmx-users] flexiblity > To: Discussion list for GROMACS users <[email protected]> > Message-ID: <[email protected]> > Content-Type: text/plain; charset=ISO-8859-1; format=flowed > > > > shiva birgani wrote: > > Dear all > > I have simulated two different proteins (A and B). I need to compare > > their flexibility. RMSF help to examine their flexibilty individually, > > but I want to campare them with each other. > > Do anybody know a solution to this? Would you please help me in this > regard? > > > > Is it not just a matter of comparing the RMSF between the two proteins? > > -Justin > > -- > ======================================== > Dear Justin
Yes I want to compare them, but I am not sure that RMSF is appropriate test to comparison, because two proteins are completely different in their amino acid contents and numbers. Regards Shiva
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