You understand correctly. On Tue, Jun 21, 2011 at 11:35 AM, shahab shariati <[email protected]> wrote: > Dear Tsjerk > > very thanks for your useful guidance. > > I now know that I should compare output of g_gyrate (containing Rg vs time) > by area.xvg output file of g_sas (containing area vs time). > > In area.xvg output file, there are several columns: "Hydrophobic", > "Hydrophilic" and "Total". > > for example in time, 100 ps: > > 100 35.9501 60.9389 96.8891 > > area is in nm2. > > from above number I understand that 35.9501 nm2 of area of protein that is > accessible to solvent belongs to > hydrophobic part of protein. > > and 60.9389 nm2 of area of protein that is accessible to solvent belongs to > hydrophilic part of protein. > > is my understanding true? > > any help will highly appreciated. > > > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >
-- Tsjerk A. Wassenaar, Ph.D. post-doctoral researcher Molecular Dynamics Group * Groningen Institute for Biomolecular Research and Biotechnology * Zernike Institute for Advanced Materials University of Groningen The Netherlands -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
