Dear Justin, gmx users, I putted a FF folder to the gromacs execution directory + changed specbond.dat and it works (I have got isopeptide bond).
In old gromacs I needed only to made a local copy of all gromacs and made changes in FF in its folders and not to copy FF folder to execution directory (every time to each new execution directory). Note difference. Maybe I can do somehow the same for new gromacs. Thank you very much for help! You pay a lot of attention for my requests as usual. P.S + to specbond.dat: *LYS* NZ 1 *GLY* C 1 0.13 LYQ GLQ -- Sincerely, Yulian Gavrilov
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