ahmet yıldırım wrote:
Dear users,
I want to calculate hydrophilic and hyrophobic SASA value of each
residue in protein. I used a command as the following:
g_sas -f run.xtc -s run.tpr -or protein_protein.xvg
Select a group for calculation of surface and a group for output
select a group: 1 (protein)
select a group: 2 (protein)
But there is SASA value of each residue in the output file. How can I
seperate the residues as a hydrophilic and hyrophobic SASA?
This is already in the output file. Check the legends of area.xvg and you will
see.
-Justin
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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