Hi, please try "git pull" (for repo.or.cz) and than redo the checkout. I accidentally deleted the release-4-5-patches branch. But it is back and it should work. If it does not work please run "git branch -r" and post the result.
BTW: The error message you get for git.gromacs.org suggests that you are behind a firewall which doesn't permit this outgoing connection. Thus in case you want to use the main git server directly you need to use a proxy server. Roland On Tue, Aug 9, 2011 at 10:03 AM, César Ávila <[email protected]> wrote: > I want to calculate secondary structure propensities of residues. > > Following Mark's message on thread > Re: [gmx-users] secondary structure propensities of residues > > > I would like to get the release-4.5-patches from git (in order to get > do_dssp.c). Nevertheless I found problems while trying to fetch it from git > repository due to the proxy. (I followed the advices on > http://www.gromacs.org/Developer_Zone/Git/Git_Tutorial#Git_behind_a_proxy > > $ git clone git://git.gromacs.org/gromacs.git > Initialized empty Git repository in ~/gromacs/.git/ > 2011/08/09 10:37:46 socat[17264] E CONNECT git.gromacs.org:9418: Forbidden > fatal: The remote end hung up unexpectedly > > I tried the alternative suggested by Roland > > git clone http://repo.or.cz/r/gromacs.git > Initialized empty Git repository in ~/gromacs/.git/ > > The gromacs directory is created and populated. After this I ran > > $git branch > * master > > $git checkout --track -b release-4-5-patches origin/release-4-5-patches > fatal: git checkout: updating paths is incompatible with switching > branches. > Did you intend to checkout 'origin/release-4-5-patches' which can not be > resolved as commit? > > Is this a problem of the server I am using or is it just a misuse of git? > > Thanks > > > > > > > > > 2011/3/22 Roland Schulz <[email protected]> > >> you can clone from http://repo.or.cz/r/gromacs.git if you have problems >> with a proxy. >> >> On Mon, Mar 21, 2011 at 10:54 PM, Alif M Latif <[email protected]>wrote: >> >>> Dear Gromacs Developers, >>> >>> Just dropping by to say THANK YOU for v4.5.4, surely is updated version >>> of 4.5.3 with all the bugfixes yes?. I'm having problem getting past my >>> university's proxy server to use git. Now hopefully I can continue my >>> research and solve git problems later..Your hard work is greatly >>> appreciated! >>> >>> MUHAMMAD ALIF MOHAMMAD LATIF >>> Laboratory of Theoretical and Computational Chemistry >>> Department of Chemistry >>> Faculty of Science >>> Universiti Putra Malaysia >>> 43400 UPM Serdang, Selangor >>> MALAYSIA >>> >>> >>> >>> -- >>> gmx-users mailing list [email protected] >>> http://lists.gromacs.org/mailman/listinfo/gmx-users >>> Please search the archive at >>> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >>> Please don't post (un)subscribe requests to the list. Use the >>> www interface or send it to [email protected]. >>> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >>> >> >> >> >> -- >> ORNL/UT Center for Molecular Biophysics cmb.ornl.gov >> 865-241-1537, ORNL PO BOX 2008 MS6309 >> >> -- >> gmx-users mailing list [email protected] >> http://lists.gromacs.org/mailman/listinfo/gmx-users >> Please search the archive at >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! >> Please don't post (un)subscribe requests to the list. Use the >> www interface or send it to [email protected]. >> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >> > > -- ORNL/UT Center for Molecular Biophysics cmb.ornl.gov 865-241-1537, ORNL PO BOX 2008 MS6309
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