Hi, For a H-NL-CH1-CH2 (H1-N-CA-C) dihedral angle in a N-terminal MET, why would pdb2gmx automatically assign gd_29 ?
In /gromos53a6.ff/ffbonded.itp, it appears: #define gd_29 0.000 3.77 3 ; -C,CHn,SI- 0.9 ; ... #define gd_41 0.000 3.77 6 ; -CHn-NT- 0.9 ; ... Thanks, Yun Shi
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