Dear Everyone,
I am going to simulate the interaction of prothrombin's Gla domain with
membrane in martini force field. Here I encountered a problem: there are 10
modified GLUs in GLA domain. Martini force field can't recognize them. How
should I overcome this problem?
What I want to do now is to add this modified residue into martini force field,
but I do not know whether it is feasible or logical? What's worse, I really
don't know what is BNLN, BNKB or ANGL? Where can I get some references about
this story?
Any help will be appreciated,
Jiangfeng Du, PhD Student
Cardiovascular Research Institute Maastricht
Department of Biochemistry
P.O. Box 616
Mobile: +31-681741859
FAX: +31-43-3884159
6200 MD Maastricht
The Netherlands--
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