Hi,
On 9/13/11 4:27 PM, Mark Abraham wrote:
On 14/09/2011 12:20 AM, Marcin Zielinski wrote:
Ok,
Using -DGMX_ACCELERATION=Power6 brings a plethora of new errors
during the compilation.
Firstly, including config.h inside the fortran .F kernel files for
power6 is causing problems with
their parsing using xlf. adding -WF,-qfpp didn't help. Had to provide
a modified xlf.cfg config file
for XLF (cppoptions = -P, instead of -C)
and pass it on with -F option and then add -qarch=pwr6 (all passed
manually) for compilation of
each power6 kernel .F file. That fixed the problem with the
compilation of Power6 kernels part.
Is there any more handy way of doing that? I've noticed that upon
using Power6, cmake generates
Fortran_DEFINES and Fortran_FLAGS inside
src/gmxlib/CMakeFiles/gmx.dir/flags.make file.
They somehow can not be modified from the command line. Same goes for
the preprocessor flags.
(-DCMAKE_CPP_FLAGS do not work?).
You can also modify flags by editing CMakeCache.txt and rerunning cmake
- if you don't pass options it should preserve what's been already found
in the cache file.
Secondly, now I get something else:
Linking C shared library libmd.so
xlc: 1501-218 (W) file ../gmxlib/libgmx.so.6 contains an incorrect
file suffix
../gmxlib/libgmx.so.6: In function `__bss_start':
(*ABS*+0x1025cb00): multiple definition of `_edata'
../gmxlib/libgmx.so.6: In function `__data_start':
(.data+0x8): multiple definition of `__dso_handle'
/usr/lib64/gcc/powerpc64-suse-linux/4.3/crtbeginS.o:(.data.rel+0x0):
first defined here
../gmxlib/libgmx.so.6: In function `_fini':
(.opd+0x30): multiple definition of `_fini'
/usr/lib64/gcc/powerpc64-suse-linux/4.3/../../../../lib64/crti.o:initfini.c:(.opd+0x18):
first defined here
../gmxlib/libgmx.so.6: In function `_init':
(.opd+0x18): multiple definition of `_init'
/usr/lib64/gcc/powerpc64-suse-linux/4.3/../../../../lib64/crti.o:initfini.c:(.opd+0x0):
first defined here
../gmxlib/libgmx.so.6: In function `_end':
(*ABS*+0x10268b20): multiple definition of `_end'
../gmxlib/libgmx.so.6: In function `__bss_start':
(*ABS*+0x1025cb00): multiple definition of `__bss_start'
/usr/lib64/gcc/powerpc64-suse-linux/4.3/crtendS.o:(.dtors+0x0):
multiple definition of `__DTOR_END__'
../gmxlib/libgmx.so.6:(.dtors+0x8): first defined here
/usr/bin/ld: error in ../gmxlib/libgmx.so.6(.eh_frame); no
.eh_frame_hdr table will be created.
make[2]: *** [src/mdlib/libmd.so.6] Error 1
make[1]: *** [src/mdlib/CMakeFiles/md.dir/all] Error 2
make: *** [all] Error 2
Beats me, sorry.
me too :(
Rossen
Mark
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