I met the similar problem before, sometimes my job writes output, sometimes
not. My cluster administrator fixed the problem and they told me that there
were some problem at some compute nodes which my job unfortunately was
dispatched to.
Jianguo
________________________________
From: lina <lina.lastn...@gmail.com>
To: Discussion list for GROMACS users <gmx-users@gromacs.org>
Sent: Sunday, 18 September 2011 5:13 PM
Subject: [gmx-users] Re: about non-writing issue
Hi,
It works now.
Not write (just based on guess) might
the md.log step such as is 11140000
while use thread I noticed the actually run step started from 11135000
so I run until it can write to the md.log
then switch to 1 node to run for a while,
then switch to more nodes.
But there might be some reason there which I don't know.
Thanks,
On Sun, Sep 18, 2011 at 4:35 PM, lina <lina.lastn...@gmail.com> wrote:
Hi,
>
>Very sporadically and also with high frequent,
>
>The job I submitted only running without writing (this job is not un-started
>one, mainly one I stopped and rerun).
>
>Before I thought I did not wait long enough, such as hours, but seriously
>after 3 or 8 hours, still running not writing.
>
>I ssh to each nodes, all is fully running.
>
>The storage is NFS, I/O flow can't be choked for hours.
>
>Really headache, sometimes it works.
>
>I have had no clue about it.
>
>
>Thanks for any suggestions,
>
>
>--
>Best Regards,
>
>lina
>
>
>
--
Best Regards,
lina
--
gmx-users mailing list gmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
--
gmx-users mailing list gmx-users@gromacs.org
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to gmx-users-requ...@gromacs.org.
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
