Dear justin thank for your previous reply
 
I have Adjusted My box vectors along only one pulling dimension.
I am pullling for distance of 5 nm from the center of box along Z axis  i am 
using the following option in editconf_d  my command is as follows
 ./editconf_d -f protein.gro -o newboxprotein.gro  -center 3  2  10   -box 6   
4   20

I am using pull_geomentry = Distance

I am expecting your reply
Thanks in advance

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