On Wed, Sep 21, 2011 at 9:01 PM, Mark Abraham <[email protected]>wrote:
> On 21/09/2011 7:27 PM, zhongjin wrote: > > Dear GMX users: > While I am installing gmx4.5.5, an error occured after "make" command : > cc -O3 -fomit-frame-pointer -finline-functions -Wall -Wno-unused -msse2 > -funroll-all-loops -std=gnu99 -pthread -I./include -o .libs/grompp grompp.o > -L/home/hzj1000/software/fftw/lib ./.libs/libgmxpreprocess.so > /home/hzj1000/gromacs-4.5.5/src/mdlib/.libs/libmd.so ../mdlib/.libs/libmd.so > /home/hzj1000/gromacs-4.5.5/src/gmxlib/.libs/libgmx.so > ../gmxlib/.libs/libgmx.so -ldl -lnsl -lm -Wl,--rpath > -Wl,/home/hzj1000/software/GMX/gromacs4.5.5/lib > /home/hzj1000/gromacs-4.5.5/src/gmxlib/.libs/libgmx.so: undefined reference > to `pthread_setaffinity_np' > collect2: ld returned 1 exit status > make[3]: *** [grompp] Error 1 > make[3]: Leaving directory `/home/hzj1000/gromacs-4.5.5/src/kernel' > make[2]: *** [all-recursive] Error 1 > make[2]: Leaving directory `/home/hzj1000/gromacs-4.5.5/src' > make[1]: *** [all] Error 2 > make[1]: Leaving directory `/home/hzj1000/gromacs-4.5.5/src' > > > > This shouldn't happen. What compiler and hardware? configure or CMake? What > command lines? > Please also add: Which Unix? Is it Linux? Distribution? What libc version? Roland > Mark > -- ORNL/UT Center for Molecular Biophysics cmb.ornl.gov 865-241-1537, ORNL PO BOX 2008 MS6309
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