Dear All,
My commands where,
genconf_d -f ethanol.gro -o ethanol512.gro -nbox 8 8 8
editconf_d -f eth512.gro -density 785.22 -o den.gro
I saw the den.gro by using VMD. I saw only as points but not the
molecules.
EM:
grompp_d -f em.mdp -c den.gro -p ethanol.top -o em.tpr
mdrun_d -deffnm em
I saw em.gro using VMD. Now I see ethanol molecules arranged all over
the box in order.
*With Regards,
Ravi Kumar Venkatraman,
IPC Dept., IISc,
Bangalore, INDIA.
+91-9686933963.*
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