Hello all, I am trying to simulate the DMPC Lipid Bilayer with water molecules. I am using Charmm27 forcefield for that. I obtain the starting structure from Charmm-GUI. The pdb file that I obtain has "DMPC" as the residue name for the lipid molecules. I checked the "lipid.rtp" file in Charmm27 and it has DMPC in the list of lipids. But, when I generate the topology using pdb2gmx, it says that it does not recognize the the DMPC residue. Therefore, the resulting topology file does not include any information about the lipids and only states the solvent information. How can I generate a topology that will include the DMPC lipids too and what residues name is recognized by Gromacs for the DMPC lipid? Kindly guide.
Regards, Saumya
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