Hello, I am sorry those were two different questions.. I wanted to know what this statement actually mean? "The set pressure should reflect whatever system you are trying to model."
Thank you With Regards Kavya > > I don't see the connection to my comment about pressure, but I'll address > this anyway. There is no temperature during EM. Hence with "gen-vel = no" > then no velocities are generated. The settings for gen-temp and gen-seed > are defaults that are assigned when none are provided in the input .mdp > file. > > I seem to recall that a pressure term is written during EM, but it is > largely meaningless. > > -Justin > > > -- > ==============================**========== > > Justin A. Lemkul > Ph.D. Candidate > ICTAS Doctoral Scholar > MILES-IGERT Trainee > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.**vt.edu/Pages/Personal/justin<http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin> > > ==============================**========== > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/**mailman/listinfo/gmx-users<http://lists.gromacs.org/mailman/listinfo/gmx-users> > Please search the archive at http://www.gromacs.org/** > Support/Mailing_Lists/Search<http://www.gromacs.org/Support/Mailing_Lists/Search>before > posting! > Please don't post (un)subscribe requests to the list. Use the www interface > or send it to [email protected]. > Can't post? Read > http://www.gromacs.org/**Support/Mailing_Lists<http://www.gromacs.org/Support/Mailing_Lists> >
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