On 02.11.2011 13:38, Ravi Kumar Venkatraman wrote:
Could anybody suggest me some books or notes or some
materials which will help me to understand the way gromacs algorithms work
i.e. how neighbor group search works e.t.c. I kindly request you to suggest
me other than the gromacs manual.*
There are many good Books and papers on the topic as Justin already noted,
it'd be hard to give a comprehensive overview.
IMHO, a rather in-depth treatment of practical problems
related to "how neighbor group search works" (and more) is given
in:
http://www.springer.com/mathematics/computational+science+%26+engineering/book/978-3-540-68094-9
("Numerical Simulation in Molecular Dynamics", Griebel, Knapek, Zumbusch)
In the TOC of this book:
http://www.springer.com/cda/content/document/cda_downloaddocument/9783540680949-t1.pdf?SGWID=0-0-45-554207-p173713766
you'll find your question treated in Chap. 3
Regards
M.
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