Dear all, I am trying to use the checkpoint file for the MDrun which war crashed. However, the following error file was obtained in my log file:
Reading file md_0_2.tpr, VERSION 4.5.5 (single precision) Reading checkpoint file state.cpt generated: Tue Nov 8 08:06:42 2011 starting mdrun 'Protein in water' 20000000 steps, 20000.0 ps (continuing from step 1685550, 1685.5 ps). [a02c31n06.pdc.kth.se:20072] 7 more processes have sent help message help-mpi-btl-base.txt / btl:no-nics [a02c31n06.pdc.kth.se:20072] Set MCA parameter "orte_base_help_aggregate" to 0 to see all help / error messages ------------------------------------------------------- Program mdrun, VERSION 4.5.3 Source code file: ../../../gromacs-4.5.3/src/gmxlib/futil.c, line: 459 File input/output error: state_step1714850.cpt For more information and tips for troubleshooting, please check the GROMACS website at http://www.gromacs.org/Documentation/Errors ------------------------------------------------------- "Good Music Saves your Soul" (Lemmy) Error on node 0, will try to stop all the nodes Halting parallel program mdrun on CPU 0 out of 8 gcq#311: "Good Music Saves your Soul" (Lemmy) -------------------------------------------------------------------------- MPI_ABORT was invoked on rank 0 in communicator MPI_COMM_WORLD with errorcode -1. NOTE: invoking MPI_ABORT causes Open MPI to kill all MPI processes. You may or may not see output from other processes, depending on exactly when Open MPI kills them. -------------------------------------------------------------------------- -------------------------------------------------------------------------- mpirun has exited due to process rank 0 with PID 20073 on node a02c31n06.pdc.kth.se exiting without calling "finalize". This may have caused other processes in the application to be terminated by signals sent by mpirun (as reported here). -------------------------------------------------------------------------- ~ Anyone can help me with this problem? Thanks so much, Xianqiang -- Xianqiang Sun Email: [email protected] Division of Theoretical Chemistry and Biology School of Biotechnology Royal Institute of Technology S-106 91 Stockholm, Sweden
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