[email protected] wrote:
Hello Justin,
I am doing project on afm simulation of protein complex.I have used em.mdp
file for minimization.
Now i am wondering where to use .ppa file for afm parameters.
Can you guide me with files related to afm simulation.
The .ppa format has not been used in many years. Versions in the 3.3.x series
used them, but now all pull code settings are specified in the .mdp file.
Please see the pulling/umbrella sampling tutorial on the Gromacs website.
-Justin
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
--
gmx-users mailing list [email protected]
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [email protected].
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
