Dear gmx_users, I am working on lipid/drug molecule system. I could make the ligand topology by PRODRG and get DMPC.itp from http://moose.bio.ucalgary.ca/index.php?page=Structures_and_Topologies.
To add ligand molecule I first changed its coordinate by: editconf -f drg.gro -o drg_newbox.gro -c -box 6.17600 6.17600 5.50000 then add drg_newbox.gro to my bilayer by: cat drg_newbox.gro dmpc_whole.gro > system.gro How can I add 6 ligand molecules in lipid bilayer symmetrically at each side of membrane? What is gromacs command to add molecules in bilayer (except editconf)? Thanks a lot in advance. Parto
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