On 28/11/2011 10:40 PM, yp sun wrote:
Dear professor, Is there any simple way to resolve my problem? Thanks!
Yes. If you've read the first link I suggested then you will have some leads for solving your problem. If they don't help you, then you will need to follow the advice in my second link before anyone here can begin help you.
Mark
Yeping Sun CAS Key Laboratory of Pathogenic Microbiology & Immunology INSTITUTE OF MICROBIOLOGY CHINESE ACADEMY OF SCIENCES NO.1 Beichen West Road,Chaoyang District,Beijing 100101,china --- *11?11?28?,??, Mark Abraham /<[email protected]>/* ??: ???: Mark Abraham <[email protected]> ??: Re: [gmx-users] Atom not found in residue while adding hydrogens ???: "Discussion list for GROMACS users" <[email protected]> ??: 2011?11?28?,??,??7:25 On 28/11/2011 10:13 PM, yp sun wrote:Dear Sir, When I run pdb2gmx, I encounter the following error information: Program pdb2gmx, VERSION 3.3.1 Source code file: genhydro.c, line: 304 Fatal error: Atom CB not found in residue ASP223 while adding hydrogens What should I do?Probably update to a much faster GROMACS version, check out http://www.gromacs.org/Documentation/Errors#Atom_X_in_residue_YYY_not_found_in_rtp_entry, and follow the guidelines here for making posts http://www.gromacs.org/Support :-) Mark -----???????------- gmx-users mailing list [email protected]<http://cn.mc156.mail.yahoo.com/mc/[email protected]> http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected] <http://cn.mc156.mail.yahoo.com/mc/[email protected]>. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
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