Dear Gmx Users, I am wondering how many of you faced a problem when you do not have a crystal structure of the protein of your interest. I am simulating terminal (app. 150 residues) of a compact protein which is said to represent the loops. I obtained such model via I-TASSER and QUARKS and that looks really consistent. Would you trust those servers which generate 3D models from the sequence when you consider terminal? Do you know any experiment which is able to validate it or a toold?
I know that this is gmx list but I am wondering if there is anyone who obtained reliable results from the simulations based on predicted model from sequence. Thank you, Steven
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