Dear users:
My compilation with the pathscale compiler hangs for over an hour on the
gmx_rms.c.o file (or perhaps the one that comes next).
[ 83%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_principal.c.o
[ 84%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_polystat.c.o
[ 84%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_potential.c.o
[ 84%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_rama.c.o
[ 84%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_rdf.c.o
[ 84%] Building C object src/tools/CMakeFiles/gmxana.dir/gmx_rms.c.o
[hangs here]
I compiled like this:
module purge
module load pathscale/4.0.11
module load openmpi_pathscale64/1.4.3_ofed
module load cmake/2.8.5
export CCDIR=/opt/ekopath/4.0.11/bin
## set the location of the single precision FFTW isntallation
export FFTW_LOCATION=/home/nealechr/exe/pathscale/fftw-3.1.2/exec
##### Nothing below this line usually needs to be changed
export CXX=pathCC
export CC=pathcc
cmake ../source/ \
-DFFTW3F_INCLUDE_DIR=$FFTW_LOCATION/include \
-DFFTW3F_LIBRARIES=$FFTW_LOCATION/lib/libfftw3f.a \
-DCMAKE_INSTALL_PREFIX=$(pwd) \
-DGMX_X11=OFF \
-DCMAKE_CXX_COMPILER=${CCDIR}/pathCC \
-DCMAKE_C_COMPILER=${CCDIR}/pathcc \
-DGMX_PREFER_STATIC_LIBS=ON \
-DGMX_MPI=OFF
make
make install
#####################
If anybody has successfully compiled with the pathscale compiler, I
would love to hear any suggestions that you can offer.
I have tried 3 fresh installations, and I have also tried cntrl^C and
then run make again without a clean. It's always the same.
Thank you,
Chris.
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