Alex Jemulin wrote:
Dear all
Which is the difference between hydropilic and hydrophobic sas?
g_sas computes hydrophobic and hydrophilic surface area based on the absolute
value of the partial charge of the atom, which can be adjusted with the -qmax flag.
How can give an interpretation to g_sas xvg graph?
Interpretation of the results is based on the question being asked and the group
being analyzed, things that only you know.
What can I find out in it and how can use g_sas to analyze a trajectory?
Start by reading g_sas -h.
-Justin
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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