Hi users, I have a submission script for gromacs mdrun to be used on IBM cluster, but i get an error while running it. the script goes like this=
#!/bin/sh # @ error = job1.$(Host).$(Cluster).$(Process).err # @ output = job1.$(Host).$(Cluster).$(Process).out # @ class = ptask32 # @ job_type = parallel # @ node = 1 # @ tasks_per_node = 4 # @ queue echo "_____________________________________" echo "LOADL_STEP_ID=$LOADL_STEP_ID" echo "_____________________________________" machine_file="/tmp/machinelist.$LOADL_STEP_ID" rm -f $machine_file for node in $LOADL_PROCESSOR_LIST do echo $node >> $machine_file done machine_count=`cat /tmp/machinelist.$LOADL_STEP_ID|wc -l` echo $machine_count echo MachineList: cat /tmp/machinelist.$LOADL_STEP_ID echo "_____________________________________" unset LOADLBATCH env |grep LOADLBATCH cd /home/staff/1adf/ /usr/bin/poe /home/gromacs-4.5.5/bin/mdrun -deffnm /home/staff/1adf/md -procs $machine_count -hostfile /tmp/machinelist.$LOADL_STEP_ID rm /tmp/machinelist.$LOADL_STEP_ID i get an out file as= _____________________________________ LOADL_STEP_ID=cnode39.97541.0 _____________________________________ 4 MachineList: cnode62 cnode7 cnode4 cnode8 _____________________________________ p0_25108: p4_error: interrupt SIGx: 4 p0_2890: p4_error: interrupt SIGx: 4 p0_2901: p4_error: interrupt SIGx: 15 p0_22760: p4_error: interrupt SIGx: 15 an error file = Reading file /home/staff/1adf/md.tpr, VERSION 4.5.4 (single precision) Sorry couldn't backup /home/staff/1adf/md.log to /home/staff/1adf/#md.log.14# Back Off! I just backed up /home/staff/1adf/md.log to /home/staff/1adf/#md.log.14# ERROR: 0031-300 Forcing all remote tasks to exit due to exit code 1 in task 0 Please anyone can help with this error. Thanks
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