[gmx-users] RMSD value

[madhumita das]

Hi GROMACS Users,

                                  I have simulated a protein(pdb id 3D9S)
for 5 nanoseconds. This protein contains 978 residues and after 5
nanoseconds I got 2.35 by comparing pdb structure with simulated one. I
want to know is this value is ok or protein is disrupted?



Yours faithfully,

Madhumita Das

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