On 10/01/2012 10:37 PM, Nirmal Prasad wrote:
I got this message "pdb2gmx: command not found"

but I installed gromacs..how to solve this error

You need a functional PATH. See http://www.gromacs.org/Downloads/Installation_Instructions#Getting_access_to_GROMACS_after_installation.

Mark


nirmal

On Tue, Jan 10, 2012 at 3:48 PM, Mark Abraham <[email protected] <mailto:[email protected]>> wrote:

    On 10/01/2012 9:12 PM, Nirmal Prasad wrote:
    Dear Gromacs users...

    I am new to gromacs...

    I have not understood this

    "

    In your shell configuration file (e.g. .bashrc for bash or
    .cshrc/.tcshrc for tcsh) you should use a command analogous to:

    source /usr/local/gromacs/bin/GMXRC

    near the end of that file.

    "
    can any one please tell me what is this..

    I answered this question about two hours ago :) Consult the link
    that the page you quote suggests you read.

    Mark

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