Hi, I'm trying to plot the displacements in z-coordinate of each particle belonging to some index group using g_traj.
I typed below thing in prompt g_traj -f md_0_2_nvt.xtc -s md_0_2_nvt.tpr -n index_traj.ndx -nox -noy -b 0 -e 50 -ox traj -w -xvg xmgrace There are 6 atoms in the desired index group. Although I selected the desired index group (let assume it is 1, 2, 3, 4, 5, 6 labelled) atoms, the g_traj only plots the displacement of first atom in index group (i.e., the displacement of atom 1 but not 2, 3, 4, 5, 6). I want to plot the displacements of all atoms (1 - 6). How do I have to do??? What things is incorrect? Have a good day :)
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