Hi, I have been trying to attach the chromophore of GFP in charmm ff parameter files. The parameters have been obtained from a published article. After making the changes as per the documentation ( http://www.gromacs.org/Documentation/How-tos/Adding_a_Residue_to_a_Force_Field) , I am getting following error :-
Atom CG is used in an interaction of type atom in the topology database, but an atom of that name was not found in residue number 51 The chromophore residue number is 66, I don't understand why there is an error for residue 51 . Please help me in rectifying this error .. Regards -- Bharat
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