Szilárd, I did a memory test run yesterday and it went fine but today received an error. So you mean to say the tesla card version nothing to do with this right.
Thanks On Thu, Jan 19, 2012 at 11:09 PM, Szilárd Páll <[email protected]>wrote: > That's a generic GPU kernel launch failure which can mean anything, > from faulty hardware to bad driver to messed up installation. > > Does the memory test run? Try to compile/install again and see if it works. > > -- > Szilárd > > > > On Thu, Jan 19, 2012 at 4:18 PM, aiswarya pawar > <[email protected]> wrote: > > when i tired running it again, i got an error as > > > > Cuda error in file > > > '/home/staff/sec/secdpal/software/openmm_tesla/platforms/cuda/./src/kernels// > bbsort.cu' > > in line 176 : unspecified launch failure. > > > > /bin/cat: file_loc: No such file or directory > > > > > > On Thu, Jan 19, 2012 at 8:45 PM, aiswarya pawar < > [email protected]> > > wrote: > >> > >> Has the tesla card got to do anything with the error. Am using Nvidia > >> Tesla S1070 1U server. > >> > >> > >> On Thu, Jan 19, 2012 at 8:37 PM, Szilárd Páll <[email protected]> > >> wrote: > >>> > >>> And sorting out where the /bin/cat error comes from because that is > >>> surely not a Gromacs message! > >>> > >>> Cheers, > >>> -- > >>> Szilárd > >>> > >>> > >>> > >>> On Thu, Jan 19, 2012 at 1:12 PM, Mark Abraham <[email protected] > > > >>> wrote: > >>> > On 19/01/2012 8:45 PM, aiswarya pawar wrote: > >>> > > >>> > Mark, > >>> > > >>> > THe normal mdrun also hangs thus not generating any output. > >>> > > >>> > > >>> > OK. It's your problem to solve... keep simplifying stuff until you > can > >>> > isolate a small number of possible causes. Top of the list is file > >>> > system > >>> > availability. > >>> > > >>> > Mark > >>> > > >>> > > >>> > > >>> > On Thu, Jan 19, 2012 at 3:09 AM, Mark Abraham < > [email protected]> > >>> > wrote: > >>> >> > >>> >> On 19/01/2012 2:59 AM, [email protected] wrote: > >>> >> > >>> >> Hi, > >>> >> > >>> >> Its going into the running mode but gets hang there for long hours > >>> >> which > >>> >> generating any data in the output file. And am not able to figure > out > >>> >> the > >>> >> error file_doc. Please anyone knows what's going wrong. > >>> >> > >>> >> > >>> >> No, but you should start trying to simplify what you're doing to see > >>> >> where > >>> >> the problem lies. Does normal mdrun work? > >>> >> > >>> >> Mark > >>> >> > >>> >> > >>> >> Thanks > >>> >> Sent from my BlackBerry® on Reliance Mobile, India's No. 1 Network. > Go > >>> >> for > >>> >> it! > >>> >> > >>> >> -----Original Message----- > >>> >> From: Szilárd Páll <[email protected]> > >>> >> Sender: [email protected] > >>> >> Date: Wed, 18 Jan 2012 14:47:59 > >>> >> To: Discussion list for GROMACS users<[email protected]> > >>> >> Reply-To: Discussion list for GROMACS users <[email protected]> > >>> >> Subject: Re: [gmx-users] mdrun-gpu error > >>> >> > >>> >> Hi, > >>> >> > >>> >> Most of those are just warnings, the only error I see there comes > from > >>> >> the shell, probably an error in your script. > >>> >> > >>> >> Cheers, > >>> >> -- > >>> >> Szilárd > >>> >> > >>> >> > >>> >> > >>> >> On Wed, Jan 18, 2012 at 12:27 PM, aiswarya pawar > >>> >> <[email protected]> wrote: > >>> >> > >>> >> Hi users, > >>> >> > >>> >> Am running mdrun on gpu . I receive an error such as= > >>> >> > >>> >> WARNING: This run will generate roughly 38570 Mb of data > >>> >> > >>> >> > >>> >> WARNING: OpenMM does not support leap-frog, will use velocity-verlet > >>> >> integrator. > >>> >> > >>> >> > >>> >> WARNING: OpenMM supports only Andersen thermostat with the > >>> >> md/md-vv/md-vv-avek integrators. > >>> >> > >>> >> > >>> >> WARNING: OpenMM supports only Monte Carlo barostat for pressure > >>> >> coupling. > >>> >> > >>> >> > >>> >> WARNING: OpenMM provides contraints as a combination of SHAKE, > SETTLE > >>> >> and > >>> >> CCMA. Accuracy is based on the SHAKE tolerance set by the > "shake_tol" > >>> >> option. > >>> >> > >>> >> /bin/cat: file_loc: No such file or directory > >>> >> > >>> >> > >>> >> and the job is running but the nothing written into .xtc, .trr, .edr > >>> >> files > >>> >> . > >>> >> What could have gone wrong? > >>> >> > >>> >> -- > >>> >> Aiswarya B Pawar > >>> >> > >>> >> Bioinformatics Dept, > >>> >> Indian Institute of Science > >>> >> Bangalore > >>> >> > >>> >> > >>> >> > >>> >> -- > >>> >> gmx-users mailing list [email protected] > >>> >> http://lists.gromacs.org/mailman/listinfo/gmx-users > >>> >> Please search the archive at > >>> >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > >>> >> Please don't post (un)subscribe requests to the list. Use the > >>> >> www interface or send it to [email protected]. > >>> >> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >>> >> > >>> >> -- > >>> >> gmx-users mailing list [email protected] > >>> >> http://lists.gromacs.org/mailman/listinfo/gmx-users > >>> >> Please search the archive at > >>> >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > >>> >> Please don't post (un)subscribe requests to the list. Use the > >>> >> www interface or send it to [email protected]. > >>> >> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >>> >> > >>> >> > >>> >> > >>> >> > >>> >> > >>> >> -- > >>> >> gmx-users mailing list [email protected] > >>> >> http://lists.gromacs.org/mailman/listinfo/gmx-users > >>> >> Please search the archive at > >>> >> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > >>> >> Please don't post (un)subscribe requests to the list. Use the > >>> >> www interface or send it to [email protected]. > >>> >> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >>> > > >>> > > >>> > > >>> > > >>> > -- > >>> > Aiswarya B Pawar > >>> > > >>> > Bioinformatics Dept, > >>> > Indian Institute of Science > >>> > Bangalore > >>> > > >>> > > >>> > > >>> > > >>> > > >>> > > >>> > -- > >>> > gmx-users mailing list [email protected] > >>> > http://lists.gromacs.org/mailman/listinfo/gmx-users > >>> > Please search the archive at > >>> > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > >>> > Please don't post (un)subscribe requests to the list. Use the > >>> > www interface or send it to [email protected]. > >>> > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >>> -- > >>> gmx-users mailing list [email protected] > >>> http://lists.gromacs.org/mailman/listinfo/gmx-users > >>> Please search the archive at > >>> http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > >>> Please don't post (un)subscribe requests to the list. Use the > >>> www interface or send it to [email protected]. > >>> Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > >> > >> > >> > >> > >> -- > >> Aiswarya B Pawar > >> > >> Bioinformatics Dept, > >> Indian Institute of Science > >> Bangalore > >> > >> > > > > > > > > -- > > Aiswarya B Pawar > > > > Bioinformatics Dept, > > Indian Institute of Science > > Bangalore > > > > > > > > -- > > gmx-users mailing list [email protected] > > http://lists.gromacs.org/mailman/listinfo/gmx-users > > Please search the archive at > > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > > Please don't post (un)subscribe requests to the list. Use the > > www interface or send it to [email protected]. > > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists > -- Aiswarya B Pawar Bioinformatics Dept, Indian Institute of Science Bangalore
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