On 24/01/2012 3:47 PM, priya thiyagarajan wrote:
hello sir,
Thanks for your kind reply..

15 boxtype accomodates 105046 solvent molecules..

Hence why adding a maximum of 50000 solvent molecules left lots of empty space.


but i need to run simulation by keeping number of water molecules constant and changing number of protein molecules..

You can't do that and keep density normal and box size constant.

Mark
--
gmx-users mailing list    [email protected]
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at 
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected].
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists

Reply via email to