On 24/01/2012 8:32 PM, Anik Sen wrote:
Hello Anik here.
I think its a silly question but, could not stop to ask as its between
me and my gromacs job.
I am using gromacs 4.5.5. I want to run a dynamics run with DNA. I
made a pdb file from vmd software. But the residue file its showing is
"MOL". There is no residue type named mol. So what will be the residue
files for DNA. Please suggest.
Your input to pdb2gmx needs to use residue names that match the .rtp
file for your force field. Either generate it with them, or edit them in
afterwards.
Mark
--
gmx-users mailing list [email protected]
http://lists.gromacs.org/mailman/listinfo/gmx-users
Please search the archive at
http://www.gromacs.org/Support/Mailing_Lists/Search before posting!
Please don't post (un)subscribe requests to the list. Use the
www interface or send it to [email protected].
Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
