On 31/01/2012 5:30 AM, Steven Neumann wrote:
Dear Gmx Users,
I run the simulation of my protein attached to a surface. I want to
plot the dependence of my protein residues (charged, polar, nonpolar)
fraction (volume or mass) with respect to the coordinate - the
distance from the surface (specific point or a line of points). Will
you suggest command in Gromacs?
You'll have to assemble suitable index groups and then use a tool that
can measure distance distributions. See manual 7.4 and 8 for clues.
Mark
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