I am using single CPU for this simulation. On Tue, Jan 31, 2012 at 11:09 AM, Emanuel Birru <[email protected]>wrote:
> ** ** > > *From:* [email protected] [mailto: > [email protected]] *On Behalf Of *Anushree Tripathi > *Sent:* Tuesday, 31 January 2012 4:11 PM > *To:* Discussion list for GROMACS users > *Subject:* [gmx-users] problem with energy minimization**** > > ** ** > > When I run the command (i.e., mdrun -v -deffnm em) for energy > minimization. > > I am getting the error: > > There is no domain decomposition for 4 nodes that is compatible with the > given box and a minimum cell size of 4.07513 nm. > > Please guide me.**** > > ** ** > > Did you run it on a cluster? Or on a multiple CPUs? **** > > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists >
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