aiswarya pawar wrote:
Dear Gromacs Users,
i have data for the distance between the protein and water atoms within
a cut off of 8A for 5ns using the g_dist option. Now i want to use
g_analyze on this data. The time frame in the output data is not
continuous because of the cut off provided. So i would like to know how
would the g_analyze would compute the data.
I'm not clear on what you're trying to do. g_analyze performs simple
statistical operations (averages, error estimates) on the input data. If there
are discontinuities (which I do not understand the nature of), they come from
the g_dist data, not what g_analyze is doing.
Please provide a more clear description of what you are doing, including all
relevant commands, and examples of the data files, if necessary.
-Justin
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
========================================
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