Fabian Casteblanco wrote:
Sorry, I meant on the previous post, using g_rdf
On Mon, Feb 13, 2012 at 12:23 PM, Fabian Casteblanco
<[email protected]> wrote:
Hello everyone,
I'm using radial distribution functions on gromacs for the first time.
Is it normal to see some noise on these plots? You can still see a
trend on the plot but it appears somewhat noisy and not as nice and
linear as some other plots I've seen in other simulations like the
tutorial.
Like anything else, the smoothness of the resulting curve is a function of the
sampling (time, size of the group, etc). Some noise is generally expected.
-Justin
--
========================================
Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
MILES-IGERT Trainee
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
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