I thought this time to be sufficient without any reasonable basis. shahid Nayeem
On Fri, Feb 24, 2012 at 7:40 PM, Justin A. Lemkul <[email protected]> wrote: > > > shahid nayeem wrote: > >> My system is a protein-protein complex. After pulling I selected windows >> at 0.1nm from an initial COM distance of 3.65nm to 5.7nm and thereafter >> windows at 0.2nm spacing was selected upto 7.5nm. In each window 10ns MD >> was done and g_wham command was run neglecting the fist 1ns run for >> equilibriation. >> > > OK, so how did you decide that 10 ns was sufficient in each window? > > -Justin > > > -- > ==============================**========== > > Justin A. Lemkul > Ph.D. Candidate > ICTAS Doctoral Scholar > MILES-IGERT Trainee > Department of Biochemistry > Virginia Tech > Blacksburg, VA > jalemkul[at]vt.edu | (540) 231-9080 > http://www.bevanlab.biochem.**vt.edu/Pages/Personal/justin<http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin> > > ==============================**========== > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/**mailman/listinfo/gmx-users<http://lists.gromacs.org/mailman/listinfo/gmx-users> > Please search the archive at http://www.gromacs.org/** > Support/Mailing_Lists/Search<http://www.gromacs.org/Support/Mailing_Lists/Search>before > posting! > Please don't post (un)subscribe requests to the list. Use the www > interface or send it to [email protected]. > Can't post? Read > http://www.gromacs.org/**Support/Mailing_Lists<http://www.gromacs.org/Support/Mailing_Lists> >
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