Hi Efrat, It indeed looks like a memory leak.
Could you please file a bug on redmine.gromacs.org? Cheers, -- Szilárd On Sun, Mar 4, 2012 at 12:21 PM, Efrat Exlrod <[email protected]> wrote: > Hi Szilard, > > Thanks for your reply. > I used your script and I think it does look as a memory leak. Please look at > the attached runchkmem.out > Is it possible this problem exists in version 4.5.5 and was solved in version > 4.6 you are using? > When will version 4.6 be released? > > Thanks, Efrat > >>Message: 2 >>Date: Fri, 2 Mar 2012 14:46:25 +0100 >>From: Szil?rd P?ll <[email protected]> >>Subject: Re: [gmx-users] Gromacs-GPU benchmark test killed after >> exhausting the memory >>To: Discussion list for GROMACS users <[email protected]> >>Message-ID: >> <cannyew7rxa0nz2weuymwhzucmfm2k6jyyp1htwghcbadtvd...@mail.gmail.com> >>Content-Type: text/plain; charset="iso-8859-1" >> >>Hi, >> >>First I thought that there might be a memory leak which could have >>caused this if you ran for really long time. However, I've just ran >>the very same benchmark (dhfr with PME) for one hour, monitored the >>memory usage and I couldn't see any change whatsoever (see the plot >>attached). >> >>I've attached a script I used to monitor the memory usage, feel free >>to use if you want check again. >> >>Cheers, >>-- >>Szil?rd >> >> >> >>On Wed, Feb 29, 2012 at 9:50 AM, Efrat Exlrod <[email protected]> wrote: >>> Hi, >>> >>> I have?Gromacs-GPU version 4.5.5 and?GTX 580. >>> I ran?dhfr-solv-PME benchmark test (see below) and my run was killed after >>> couple of hours?exhausting all the computer memory, including the swap (2G >>> +?4G swap). >>> Has anyone encountered this problem? What?is wrong? >>> >>> Thanks, Efrat > -- > gmx-users mailing list [email protected] > http://lists.gromacs.org/mailman/listinfo/gmx-users > Please search the archive at > http://www.gromacs.org/Support/Mailing_Lists/Search before posting! > Please don't post (un)subscribe requests to the list. Use the > www interface or send it to [email protected]. > Can't post? Read http://www.gromacs.org/Support/Mailing_Lists -- gmx-users mailing list [email protected] http://lists.gromacs.org/mailman/listinfo/gmx-users Please search the archive at http://www.gromacs.org/Support/Mailing_Lists/Search before posting! Please don't post (un)subscribe requests to the list. Use the www interface or send it to [email protected]. Can't post? Read http://www.gromacs.org/Support/Mailing_Lists
